PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0142s0034.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 463aa    MW: 52207.8 Da    PI: 9.502
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0142s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.94.7e-1755136178
             trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                          rW+ +e+l+Li+a+++  e+ r+++       + ++W+ ++ ++ e+g++r + qCk++w +l ++ykkik+ e+++  +s+s 
  Mapoly0142s0034.1.p  55 RWSMNETLVLIAAKKKEMEEDRDARlrgritHDSNKWSLIALFCNEHGVHRDSSQCKKRWHSLYTEYKKIKDYEREG--GSVSY 136
                          8************98444444433223334499*****************************************997..44444 PP

2trihelix59.77.5e-19221303179
             trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                          rWt +e+l Li+a+++  ++ +++       ++ ++W+++++++ ++g++r + qCk++w nl ++ykki+++e+   s+++s +
  Mapoly0142s0034.1.p 221 RWTVHETLILIAAKKKETSDENDAPkrgrtvQDSKKWAAIARFCNDQGVKRDSMQCKKRWHNLYTEYKKIRDHERV--SGVESYW 303
                          8**************6666666432233345******************************************996..5666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.18948118IPR017877Myb-like domain
SMARTSM00717252120IPR001005SANT/Myb domain
PfamPF138371.7E-1354163No hitNo description
Gene3DG3DSA:1.10.10.604.8E-555117IPR009057Homeodomain-like
SuperFamilySSF466895.74E-581119IPR009057Homeodomain-like
PROSITE profilePS500907.457214284IPR017877Myb-like domain
SMARTSM007171.2E-4218286IPR001005SANT/Myb domain
PfamPF138372.3E-12220303No hitNo description
SuperFamilySSF466898.16E-6220286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-6221283IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLADEVERSR KRGISQAVVR QMMDHEGAME HEALPGLGTG GDAGAHEERN TRASRWSMNE  60
TLVLIAAKKK EMEEDRDARL RGRITHDSNK WSLIALFCNE HGVHRDSSQC KKRWHSLYTE  120
YKKIKDYERE GGSVSYWLMS ADKRRESTLA PMFEREVFDR MDSFLSGTTK VVPEPTFDSG  180
APVLIGVADL DNQEHSQGSS MEMGGARSGA VGGEKNHRAS RWTVHETLIL IAAKKKETSD  240
ENDAPKRGRT VQDSKKWAAI ARFCNDQGVK RDSMQCKKRW HNLYTEYKKI RDHERVSGVE  300
SYWVMSVEKR RKSKLARMFE REVYDYMDDF LSRTPKVMPG STFENGRPSS VRDPVPPREP  360
LPEVGENNSA QQGSLMELGG LGSTAFGTGH ARKRQRRRLL SRDDAPDQKL VSVLESNGKA  420
MQAELAADRE LRKEQGANLI AVFDKLADGL GQIASAIHNL QK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391397RKRQRRR
2393401RQRRRLLSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1356525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-23Trihelix family protein